Publications 2013

Journals

  1. Cultivation of planktonic anaerobic ammonium oxidation (anammox) bacteria by using membrane bioreactor
    Oshiki, M., Awata, T., Kindaichi, T., Satoh, H. and Okabe, S.
    Microbes and Environments, 2013, 28(4), 436-443.
  2. Source identification of nitrous oxide on autotrophic partial nitrification in a granular sludge reactor
    Rathnayake, L., Song, Y.-J., Tumendelger, A., Oshiki, M., Ishii, S., Satoh, H., Toyoda, S., Yoshida, N. and Okabe, S.
    Water Research, 2013, 47(19), 7078-7086.
  3. Environmental detection of GI, GII and GIV norovirus using a generic real-time RT-PCR assay
    Miura, T., Parnaudeau, S., Grodzki, M., Okabe, S., Atmar, R. L. and Le Guyader, F. S.
    Applied and Environmental Microbiology, 2013, 79(21), 6585-6592.
  4. Bayesian modeling of enteric virus density in wastewater using left-censored data
    Kato, T., Miura, T., Okabe, S. and Sano, D.
    Food and Environmental Virology, 2013, 5(4), 185-193.
  5. Use of a genetically-engineered Escherichia coli strain as a sample process control for quantification of the host-specific bacterial genetic markers
    Kobayashi, A., Sano, D., Taniuchi, A., Ishii, S. and Okabe, S.
    Applied Microbiology and Biotechnology, 2013, 97(20), 9165-9173.
  6. Hydrogenophaga electricumsp. nov., isolated from anodic biofilms of an acetate-fed microbial fuel cell
    Kimura, Z., and Okabe, S.
    The Journal of General and Applied Microbiology, 2013, 59(4), 261-266.
  7. Histo-blood group antigen-like substances of human enteric bacteria as specific adsorbents for human noroviruses
    Miura, T., Sano, D., Suenaga, A., Yoshimura, T., Fuzawa, M., Nakagomi, T., Nakagomi, O. and Okabe, S.
    Journal of Virology, 2013, 87(17), 9441-9451.
  8. Acetate oxidation by syntrophic association between Geobacter sulfurreducens and a hydrogen-utilizing exoelectrogen
    Kimura, Z. and Okabe, S.
    ISME Journal, 2013, 7(8), 1472-1482.
  9. Chicken- and duck-associated Bacteroides-Prevotella genetic markers for detecting fecal contamination in environmental water
    Kobayashi, A., Sano, D., Hatori, J., Ishii, S. and Okabe, S.
    Applied Microbiology and Biotechnology, 2013, 97(16), 7427-7437.
  10. Spatial and temporal oxygen dynamics in macrofaunal burrows in sediments: A review of analytical tools and observational evidence
    Satoh, H. and Okabe, S.
    Microbes and Environments, 2013, 28(2), 166-179.
  11. Nitrate-dependent ferrous iron oxidation by anaerobic ammonium oxidation (anammox) bacteria
    Oshiki, M., Ishii, S., Yoshida, K., Fujii, N., Ishiguro, M., Satoh, H. and Okabe, S.
    Applied and Environmental Microbiology, 2013, 79(13), 4087-4093.
  12. Physiological characterization of an anaerobic ammonium-oxidizing bacterium belonging to the "Candidatus Scalindua" group
    Awata, T., Oshiki, M., Kindaichi, T., Ozaki, N., Ohashi, A. and Okabe, S.
    Applied and Environmental Microbiology, 2013, 79(13), 4145-4148.
  13. Evaluation of whole wastewater effluent impacts on HepG2 using DNA microarray-based transcriptome analysis
    Hara-Yamamura, H., Nakashima, K., Hoque, A., Miyoshi, T., Kimura, K., Watanabe, Y. and Okabe, S.
    Environmental Science and Technology, 2013, 47(10), 5425-5432.
  14. Development and characterization of the partial nitrification aerobic granules in a sequencing batch airlift reactor
    Song, Y., Ishii, S., Rathnayake, L., Ito, T., Satoh, H. and Okabe, S.
    Bioresource Technology, 2013, 139, 285-291.
  15. A new approach for evaluating the infectivity of noncultivatable enteric viruses without cell culture
    Tojo, K., Sano, D., Miura, T., Nakagomi, T., Nakagomi, O. and Okabe, S.
    Water Science and Technology, 2013, 67(10), 2236-2240.
  16. Introduction of a degassing membrane technology into anaerobic wastewater treatment
    Bandara, W., Satoh, H., Sasakawa, M., Nakahara, Y., Takahashi, M. and Okabe, S.
    Water Environment Research, 2013, 85(5), 387-390.
  17. Simultaneous quantification of multiple food and waterborne pathogens by use of microfluidic quantitative PCR
    Ishii, S., Segawa, T. and Okabe, S.
    Applied and Environmental Microbiology, 2013, 79(9), 2891-2898.
  18. BODIPY-based ratiometric fluoroionophores with bidirectional spectral shifts for the selective recognition of heavy metal ions
    Hafuka, A., Taniyama, H., Son, S.-H., Yamada, K., Takahashi, M., Okabe, S. and Satoh, H.
    Bulletin of the Chemical Society of Japan, 2013, 86(1), 37-44.
  19. Effects of temperature and predator on the persistence of host-specific Bacteroides-Prevotella genetic markers in water
    Kobayashi, A., Sano, D. and Okabe, S.
    Water Science and Technology, 2013, 67(4), 838-845.

International conference presentations

  1. Stability of rotavirus infectivity analyzed by oxidative stress marker detection
    Sano, D., Tojo, K., Nakagomi, T., Nakagomi, O. and Okabe, S.
    The 5th European Rotavirus Biology Meeting
    Valencia, Spain.
    Oct. 6-9, 2013.
  2. A new framework to determine the evidence-based standard values for microbiologically safe water management
    Kobayashi, A., Sano, D., Kato, T., Miura, T., Ozawa, S., Ishii, S. and Okabe, S.
    WaterMicro2013
    Florianopolis island, Santa Catariana, Brazil.
    Sep. 15-20, 2013.
  3. Bacterial extracellular polymeric substances as the specific carrier for human norovirus particles
    (Poster presentation)
    Yoshimura, T, Sano, D., Miura, T., Nakagomi, T., Nakagomi, O. and Okabe, S.
    WaterMicro2013
    Florianopolis island, Santa Catariana, Brazil.
    Sep. 15-20, 2013.
  4. Identification of key N2O production pathways in aerobic partial nitrifying granules
    Ishii, S., Song, Y., Rathnayake, L., Tumendelger, A., S., Satoh, H., Toyoda, S., Yoshida, N. and Okabe, S.
    The 3rd International Conference on Nitrification (ICoN3).
    Chuo University, Tokyo, Japan.
    Sep. 2-5, 2013.
  5. Anaerobic ammonium-oxidizing (anammox) bacteria; an iron oxidizer from the phylum Planctomycetes
    Oshiki, M., Ishii, S., Yoshida, K., Ishiguro, M., Satoh, H. and Okabe, S.
    The 3rd International Conference on Nitrification (ICoN3).
    Chuo University, Tokyo, Japan.
    Sep. 2-5, 2013.
  6. Source identification of nitrous oxide in an autotrophic partial nitrification reactor
    Rathnayake, L., Song, Y., Tumendelger, A., Oshiki, M., Ishii, S., Satoh, H., Toyoda, S., Yoshida, N. and Okabe, S.
    The 3rd International Conference on Nitrification (ICoN3).
    Chuo University, Tokyo, Japan.
    Sep. 2-5, 2013.
  7. Next-generation freshwater monitoring: from fecal indicator approach to direct multi-pathogen quantification
    Ishii, S.
    Next Generation Monitoring and Remediation Techniques for Impaired Freshwater Systems.
    Soul, Korea.
    Jul 1, 2013.
  8. Microfiltration of human noroviruses: Effects of the presence of human enteric bacteria on virus rejection
    Amarasiri, M., Sano, D., Yoshimura, T., Ishizaki, S., Nakagomi, T., Nakagomi, O. and Okabe, S.
    WET2013.
    Tokyo University of Agriculture and Technology, Tokyo, Japan.
    Jun. 15-16, 2013.
  9. Identification of key N2O production pathways in aerobic partial nitrifying granules
    Okabe, S.
    International Environmental Engineering Conference (IEEC)
    Seoul, June 12-13, 2013.
  10. Simultaneous quantification of multiple food and waterborne pathogens by use of microfluidic quantitative PCR
    Ishii, S., Segawa, T. and Okabe, S.
    ASM2013
    Denvor, Colorado, USA.
    May 18-21, 2013.
  11. Improvement of quantification of bacterial genetic markers by using a genetically-engineered strain of Escherichia coli as a process control
    Kobayashi, A., Sano, D., Ishii, S. and Okabe, S.
    ASM2013
    Denvor, Colorado, USA.
    May 18-21, 2013.
  12. A hidden relationship between norovirus and enteric bacteria: norovirus exploits histo-blood group antigen-like substances on bacterial cells for its better survival in nature?
    Sano, D., Miura, T., Yoshimura, T., Fuzawa, M., Nakagomi, T., Nakagomi, O. and Okabe, S.
    The 47th Joint Working Conference on Viral Diseases, US-Japan Cooperative Medical Science Program.
    Mandarin Oriental Singapore, Singapore.
    Mar. 12-13, 2013.
  13. Simultaneous quantification of multiple waterborne pathogens by use of microfluidic quantitative PCR
    Ishii, S., Segawa, T. and Okabe, S.
    The 3rd Young Professors and Students Symposium, NSFC-JST Joint Research Program.
    Xi'an, China.
    March 7th, 2013.
  14. Direct quantification of pathogens in natural and irrigation water samples for risk assessment
    Nakamura, T., Ishii, S. and Okabe, S.
    The 3rd Young Professors and Students Symposium, NSFC-JST Joint Research Program.
    Xi'an, China.
    March 7th, 2013.
  15. Towards mechanistic understanding of anaerobic nitrate-dependent Fe(II) oxidation
    Jokai, K., Ishii, S. and Okabe, S.
    The 3rd Young Professors and Students Symposium, NSFC-JST Joint Research Program.
    Xi'an, China.
    March 7th, 2013.
  16. Development of a novel photocatalytic nano-composite membrane to create new water resources from wastewater
    Sano, D., Fernandez-Garcia, M. and Okabe, S.
    SJ-NANO2013 (Spanich-Japanese Bilateral Workshop)
    Epochal Tsukuba International Congress Center, Tsukuba, Japan.
    Mar. 5th, 2013.
  17. Microsensor measurements of nitrous oxide and nitric oxide production rates in partial nitrification and anammox granules
    Rathnayake, R. M. L. D., Satoh, H., Takahashi, M. and Okabe, S.
    2nd Water Research Conference, IWA
    Singapore.
    Jan. 20th-23rd, 2013.
  18. Performance target of enteric virus removal with MBR
    Sano, D., Miura, T. and Okabe, S.
    Global Leadership Initiative Special Workshop on Water Virology
    Parkside Hotel Ueno, Tokyo.
    Jan. 19th, 2013.