Publications 2007

Journaks

  1. Layered structure of bacterial and archaeal communities and their in situ activities in anaerobic granules
    Satoh, H., Miura, Y., Tsushima, I., and Okabe, S.
    Applied and Environmental Microbiology, 2007, 73(22), 7300-7307.
  2. Significance of Chloroflexi in performance of submerged membrane bioreactors (MBR) treating municipal wastewater
    Miura, Y., Watanabe, Y., and Okabe, S.
    Environmental Science and Technology, 2007, 41(22), 7787-7794.
  3. Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: Effects of temperature and salinity
    Okabe, S., and Shimazu, Y.
    Applied Microbiology and Biotechnology, 2007, 76(4), 935-944.
  4. In Situ Activity and Spatial Organization of Anaerobic Ammonium-Oxidizing (Anammox) Bacteria in Biofilms
    Kindaichi, T., Tsushima, I., Ogasawara, Y., Shimokawa, M., Ozaki, N., Satoh, H., and Okabe, S.
    Applied and Environmental Microbiology, 2007, 73(15), 4931-4939.
  5. Relationships between Bacteroides 16S rRNA genetic markers and presence of bacterial enteric pathogens and conventional fecal indicators
    Savichtcheva, O., Okayama, N., and Okabe, S.
    Water Research, 2007, 41(16), 3615-3628.
  6. Classification of heavy metal toxicity by human DNA microarray analysis
    Kawata, K., Yokoo, H., Shimazaki, R., and Okabe, S.
    Environmental Science and Technology, 2007, 41(10), 3769-3774.
  7. Phylogenetic and functional diversity of propionate-oxidizing bacteria in an anaerobic digester sludge
    Ariesyady, H. D., Yoshiguchi, K., Ito, T., and Okabe, S.
    Applied Microbiology and Biotechnology, 2007, 75, 673-683.
  8. Development of a super high-rate ANAMMOX reactor and in situ analysis of biofilm structure and function
    Tsushima, I., Ogasawara, Y., Shimokawa, M., Kindaichi, T., and Okabe, S.
    Water Science and Technology, 2007, 55(8/9), 9-17.
  9. Development of High-Rate Anaerobic Ammonium-Oxidizing (ANAMMOX) Biofilm Reactors
    Tsushima, I., Ogasawara, Y., Shimokawa, M., Kindaichi, T., and Okabe, S.
    Water Research, 2007, 41(8), 1623-1634.
  10. Functional bacterial and archaeal community structures of major trophic groups in a full-scale anaerobic sludge digester
    Ariesyady, H. D., Ito, T., and Okabe, S.
    Water Research, 2007, 41(7), 1554-1568.
  11. Quantification of host-specific Bacteroides-Prevotella 16S rRNA genetic markers for assessment of fecal pollution in freshwater
    Okabe, S., Okayama, N., Savichtcheva, O., and Ito, T.
    Applied Microbiology and Biotechnology, 2007, 73(4), 890-901.
  12. Influences of benthic infaunal burrows on community structure and activity of ammonia-oxidizing bacteria in intertidal sediments
    Satoh, H., Nakamura, Y., and Okabe, S.
    Applied and Environmental Microbiology, 2007, 73(4), 3987-3994.
  13. Succession of sulfur-oxidizing bacteria in the microbial community on corroding concretes in sewer systems
    Okabe, S., Odagiri, M., Ito, T., and Satoh, H.
    Applied and Environmental Microbiology, 2007, 73(3), 971-980.
  14. Quantification of anaerobic ammonium-oxidizing bacteria in enrichment cultures by real-time PCR
    Tsushima, I., Kindaichi, T., and Okabe, S.
    Water Research, 2007, 41(4), 785-794.
  15. Membrane biofouling in pilot-scale membrane bioreactors (MBRs) treating municipal wastewater: impact of biofilm formation
    Miura, Y., Watanabe, Y., and Okabe, S.
    Environmental Science and Technology, 2007, 41(2), 632-638.
  16. Bacterial community structures in MBRs treating municipal wastewater: relationship between community stability and reactor performance
    Miura, Y., Hiraiwa, M. H., Ito, T., Itonaga, T., Watanabe, Y., and Okabe, S.
    Water Research, 2007, 41(3), 627-637.

Books

  1. 「Eco-physiology of sulfate-reducing bacteria in environmental biofilms」
    Okabe, S.
    「Sulphate-reducing bacteria: Environmental and Engineered systems」
    Larry L. Barton and Allan W. Hamilton eds., Chapter 12，pp.359-381, Cambridge University Press, 2007.

International conference proceedings

  1. Persistence of Bacteroides-Prevotella 16S rRNA genetic markers in environmental water
    Okabe, S. and Shimazu, Y.
    The 14th International symposium on health-related water microbiology, Tokyo, Japan.
    September 9-15, 2007
  2. Microbial source tracking by using host-specific Bacteroides-Prevotella 16S rRNA genetic markers
    Okabe, S.
    Proceedings of the 14th joint seminar of JSPA-MOE core university program on urban environment, Kyoto, Japan.
    September 7-8, 2007
  3. Summary of QPCR studies in Japanese watersheds
    Okabe, S. (Invited lecture)
    The U.S. Environmental Protection Agency (EPA) International workshop on microbial source tracking, Cincinnati, OH.
    July 9-11, 2007
  4. Effects of sizes and types of electrode on electricity generation and microbial community structure of anode biofilms in continuous MFCs
    Chung, K., and Okabe, S.
    The 4th IWA Leading-Edge Conference and Exhibition on Water and Wastewater Technologies, Singapore.
    September 4-7, 2007
  5. American Society for Microbiology Conference on Biofilms
    Thitiwhat, M., Ito, A., and Okabe, S.
    American Society for Microbiology Conference on Biofilms, Quebec, Canada.
    March 25-29, 2007.
  6. In situ activity and spatial organization of anaerobic ammonium-oxidizing (Anammox) bacteria in biofilms
    Okabe, S., Ogasawara, Y., and Kindaichi, Y. (Invited lecture)
    The 4th American Society for Microbiology Conference on Biofilms, Quebec, Canada.
    March 25-29, 2007