研究業績　2006年

論文

  1. Population dynamics and in situ kinetics of nitrifying bacteria in autotrophic nitrifying biofilms as determined by real-time quantitative PCR
    Kindaichi, T., Kawano, Y., Ito, T., Satoh, H., and Okabe S.
    Biotechnology and Bioengineering, 2006, 94(6), 1111-1121
  2. Alternative indicators of fecal pollution: relations with pathogens and conventional indicators, current methodologies for direct pathogen monitoring and future application perspectives
    Savichtcheva, O. and Okabe, S.
    Water Research, 2006, 40(13), 2463-2476.
  3. Community structures and activities of nitrifying and denitrifying bacteria in industrial wastewater-treating biofilm
    Satoh, H., Yamakawa, T., Kindaichi, T., Ito, T., and Okabe, S.
    Biotechnology and Bioengineering, 2006, 94(4), 762-772.
  4. Community structure, abundance and in situ activity of nitrifying bacteria in river sediments as determined by the combined use of molecular techniques and microelectrodes
    Nakamura, Y., Satoh, H., Kindaichi, T., and Okabe, S.
    Environmental Science and Technology, 2006, 40(5), 1532-1539.
  5. A vista for microbial ecology and environmental biotechnology
    Rittmann, B. E., Haunser, M., Loeffler, F., Love, N. G., Muyzer, G., Okabe, S., Oerther, D. B., Peccia, P., Raskin, L., Wagner, M.
    Environmental Science and Technology, 2006, 40(4), 1096-1103.

著書

  1. 「特定微生物の検出・定量」
    岡部　聡
    「水環境ハンドブック」，18.3，pp.563-574, (社)日本水環境学会編集，2006.

国際会議紀要等

  1. Microbial source tracking by using host-specific Bacteroides-Prevotella 16S rRNA genetic markers
    Okabe, S., Okayama, N., Savichtcheva, O., Watanabe, Y.
    The 3rd International Symposium on the Development of Water Resource Management System in Mekong Watershed.
  2. Community structure and in situ activity of ANAMMOX biofilms
    Okabe, S.
    The Proceedings of the Croucher Foundation Advanced Study Institute (ASI) Leading-edge strategies and Technologies for sustainable urban water management.
  3. Development of a super high-rate ANAMMOX reactor and in situ analysis of biofilm structure and function
    Tsushima, I., Ogasawara, Y., Shimokawa, M., Kindaichi, T., and Okabe, S. (Invited lecture)
    The Proceedings of Biofilm Systems VI, Pp. 31-38. Amsterdam RAI, The Netherlands.
    September 24-27, 2006.
  4. Membrane biofouling in the MBR treating domestic wastewater: Identification of key players in membrane biofouling
    Miura, Y., Watanabe, Y., and Okabe, S.
    The Proceedings of Biofilm Systems VI, p24?27. Amsterdam RAI, The Netherlands.
    September 24-27, 2006.
  5. Substrate cross-feeding in autotrophic nitrifying biofilms
    Okabe, S. (Invited lecture)
    The fourth Okazaki Biology Conference: “Terra Microbiology 2” (OBC4) Pp.35.
  6. F-phenocopies: The characteristics of natural conjugative plasmid-bearing Escherichia coli biofilms
    May, T., Ito, A., and Okabe, S.
    ISME-11, Vienna, Austria
    August 20-25, 2006.
  7. Uncultured filamentous microbes affiliated with the phylum-level bacterial clone cluster KSB3 cause the fatal bulking of UASB sludge granules
    Yamada, T., Yamauchi, T., Shiraishi, K., Ito, T., Okabe, S., Ohashi, A., Harada, H., Kamagata, Y., and Sekiguchi, Y.
    ISME-11, Vienna, Austria
    August 20-25, 2006.
  8. Microbial community structure in a super high-rate anammox biofilm
    Kindaichi, T., Tsushima, I., Ozaki, N., and Okabe, S.
    ISME-11, Vienna, Austria
    August 20-25, 2006.
  9. F conjugation plasmid plays role in cell-cell interaction in Escherichia coli biofilm
    May, T., Ito, A., and Okabe, S.
    The 20 th IUBMB International congress of biochemistry and molecular biology, Kyoto, Japan.
    June 18-23, 2006.
  10. The contribution of rpoS to formation of Escherichia coli biofilm
    Ito, A., May, T., and Okabe, S.
    The second International conference on Biofilms, Leipzig, Germany.
    March 23-24, 2006.
  11. Improved rapid determination of plasmid copy number by microchip electrophoresis
    May, T., Ito, A., and Okabe, S.
    Annual Conference VAAM, Jena, Germany.
    March 19-22, 2006.
  12. How F conjugation plasmid drive Escherichia coli to build mature biofilm?
    May, T., Ito, A., and Okabe, S.
    The second International conference on Biofilm, Leipzig, Germany.
    March 23-24, 2006.
  13. Bioaugmentation via conjugation in biofilms treating 3-Chloroaniline: effects of selective pressure
    McCaslin, H., Ito, T., Okab,e S., Dejonghe, W., de Bivar Xavier, J., and Wuertz, S.
    TThe second International conference on Biofilm, Leipzig, Germany.
    March 23-24, 2006.
  14. Analysis of structure, function and eco-physiological interactions among community members in complex multispecies biofilms
    Okabe, S., Nakamura, Y., and Kindaichi, T.
    Proceedings of the 9th and 10th joint seminar of JSPA-MOE core university program on urban environment.

その他の論文（総説，解説）

  1. 硝化細菌バイオフィルム内の細菌間生態学的相互作用の解析
    岡部　聡
    日本微生物工学会誌, 2006, 12(84), 491-494.